I play a fun Tidus proliferate deck with ~25 different kind of counters, that I move around a lot on my permanents, and I wanted a nice and easy way to track them, so here it is (https://deckstats.net/decks/133171/4293939-tidus).

All the counters can be printed any number of times, depending on your deck.

###Technical details

Counters

The counters are 1mm thick on a 24mm hexagonal base. The side are angled up so that they can stack easily.

Drawer

Each drawer can hold up to 18 stacks of 10 counters.

Box

The box is made to hold 3 drawers in height. The height is tight enough so that the counters cannot come off the drawer when in the box, but the drawers can be inserted easily. The lid slides in very easily (perhaps too easily), I had to secure it by adding 2 layers of white electrical tape on the sides to make it slightly thicker so that it holds in well.

Scalability

The size of the counters is perfect for an mtg card and you can have multiple of them on a card. If you want to scale them, I recommend only scaling the X and Y, and keeping the Z as is, for the height of the counters, the drawers and the box.

Coloring

I used Posca markers to color the symbol on the marker in black. The symbol is 0.3 mm high, which is just fine to color it without being too proeminent. I also colored the edges of the counters so that they can be counted more easily when stacked.

Extensibility

The "base" file is there without any symbol and can be used to add a custom symbol on it. Make sure to make the symbol 0.3mm or you might have troubles stacking them.

Printer Settings

####Printer Artillery Sidewinder X2

Material

White PLA

####Supports None for the counters None for the drawer Tree with overhang 61 degrees for the box, only used for the Mana symbol decorations Tree with overhang 61 degrees for the lid, only used for the holes

Layer height

0.12 mm Can probably be fine with 0.16 Make sure that the counters symbol get at least 2 printing layers, or you might have trouble coloring them without going over the edge.

Infill

10%

Build plate adhesion

Skirt is enough for the counters Brim recommended for the box and lid to avoid cornering up