I hollowed out this nice little cupcake in Blender and separated it into a lid, a base, and the cherry on top so that it can be used as a box for holding small items. I also made the cherry stem a little thicker so that it could be used as a handle to pick off the lid. I ended up gluing the cherry to the icing topper for extra bonding.

UPDATE 09-11-18: Per user request, there is a new base that is taller and should now leave room for icing on the cupcake so that the lid may close. There is also a version with a hole in the bottom so that removing the cupcake from the base is easier.